Showing posts with label analysis. Show all posts
Showing posts with label analysis. Show all posts

Thursday, 27 October 2011

Kepler Analysis Projects One-Third of Sun-Like Stars Have an Earth-Like Planet Orbiting

Kepler Analysis Projects One-Third of Sun-Like Stars Have an Earth-Like Planet Orbiting | Popular Science@import "/files/css/1857af3413d9ad8bd2f9d3926af8ec39.css";@import "/files/css/33f6b7ecb4513ed2fe6c670880a27187.css"; home Login/Register Newsletter Subscribe RSS GadgetsComputersCamerasSmartphonesVideo GamesCarsConceptsHybridsElectric CarsScienceFuture of the EnvironmentEnergyHealthPopSci Eco TourTechnologyMilitaryAviationSpaceRobotsEngineeringDIYProjectsHacksToolsAuto DIYMore From Our Partner: Toolmonger GalleriesVideosColumnsThe GrouseSex FilesGreen Dream Innovation ChallengesHow It WorksFeatures Tweet Digg Kepler Analysis Projects One-Third of Sun-Like Stars Have an Earth-Like Planet Orbiting By Clay Dillow Posted 09.28.2011 at 2:57 pm 27 Comments
Exoplanets Around HD 10180 An artist's rendering. ESO

One of the fun things about astronomy is that we can only know so much through empirical observation, yet we can “know” so much more through enlightened, mathematical guesswork. Such is the nature of the most interesting new science paper I’ve come across on the Internet today. In it, Wesley Traub of CalTech crunches some Kepler data and makes a tantalizing mathematical prediction: one-third of sun-like stars have at least one earth-like terrestrial planet orbiting in their habitable zones.

If that turns out to be the case, that’s big news of course. The habitable zone, or the “goldilocks zone” as it’s often known (not to close to the star, not too far away), is the orbital range where it’s possible for liquid water to exist. Thus, it’s the range where life as we know it could feasibly take root.

Related ArticlesAstronomers Capture First Images of an Exoplanet Orbiting Its Star Largest Known Exoplanet DiscoveredKepler Sightings of New 'Earth-Like' Exoplanets Are Not ConfirmedTagsTechnology, Clay Dillow, exoplanets, goldilocks zone, habitable zone, kepler space telescope, SpaceThe planet-hunting Kepler observatory is designed specifically to seek out planets orbiting distant stars, and thus far its been a boon for exoplanetary science. In 136 days it has scanned some 150,000 target stars looking for the signature wobble exerted on those stars by orbiting satellites. In doing so, it has found 1,235 potential planets.

It’s from that data that Traub has extracted his conclusion. He looked particularly at the stars that are most like our sun--those classified F, G, or K. He then looked at the kinds of planets that are most often found orbiting them and at what ranges they orbit. In his analysis, he notes many interesting (and somewhat expected) things, like the fact that nearly a third of the planets Kepler has found orbit their stars in less than 42 days, putting them too close to be in the habitable zone (this is also because planets closer to their stars are easier for Kepler to see).

Larger terrestrial planets out there in the habitable zone are harder for Kepler to spot, but that doesn’t mean they’re not there. And Traub says his number crunching allows us to get a pretty good idea of how many there should be. Using some math we don’t pretend to understand, he plugged in the numbers for longer orbits--orbits in the habitable zone--into his analysis. The finding: "About one-third of FGK stars are predicted to have at least one terrestrial, habitable-zone planet."

That’s not to say they are inhabited, or that they do have liquid water, or that they even exist. But Traub’s math suggests that they should exist, at least until more data changes the equation. And for now, that spells a lot of potential goldilocks planets. Read the full paper via arXiv.

[Technology Review]

Previous Article: NASA's Falling UARS Satellite Found in Remote South PacificNext Article: Army Developing Drones That Can Recognize Your Face From a Distance 27 Comments Link to this comment eregorn8 09/28/11 at 3:39 pm

Interstellar colonization, anyone?

Link to this comment Lord Elliot the... 09/28/11 at 3:41 pm

I'm going to apply these numbers to the drake equation...
-Spouting a fountain of nonsense since 1995-

Link to this comment mp 09/28/11 at 4:07 pm

I just want them to find the mythical Planet X. And its not the recently found 10th dwarf planet Eris. Once we find planet X, we will found our 2nd earth home, YEA!

Link to this comment pheonix1012 09/28/11 at 4:30 pm

I'm not surprised. three decades ago most astronomers would agree that our existence in the universe was fairly unique. With better scientific equipment and more accurate empirical data, we find that we are not unique, but we (like the multitude of atoms in the universe) are only one of many.

I think most stars have planets around them and a good deal of them (regardless of whether they are FGK category stars) with the potential of harboring life. Thus proving the lack of random order to the universe. We are simply the byproduct of a logical design. Therefore, there must be other worlds like ours. We are seeing living proof through the discovery of terrestrial and jovian worlds.

The most random and/or rare things tend to be extremely improbable to impossible to find.

@mp

Planet X was a concept developed following the discovery of Neptune in 1846. It was born from the possibility that there was in fact another planet outside of its orbit. The search for Planet X did not start until the turn of the 20th Century leading to Pluto's discover in 1930.

Since then Planet X has been the title for any unknown planet beyond the common knowledge of the initial nine. During the previous two decades three plutonian objects were discovered and named within this solar system; two outside of Pluto's orbit in the Kuiper Belt, and one in the Prime Belt between Mars and Jupiter. In succession, there names are Eris, Haumea, and Makemake.

There are possibly several dwarf planets/plutonian objects/planetoids that rest within the Prime and the Kuiper Belt. They are probably not subjected to be named unless used as they possibly range in the thousands. Every planetary discovery following has been extrasolar (i.e. planetary discovery in a foreign star system).

Planet X is a tagline for a sci-fi character that has no clue what planet they're on (i.e. Kurt Russell portraying Col. Jack O'Neil in the 1994 film Stargate).

Link to this comment cholin3947 09/28/11 at 5:49 pm

I'd like to know how broadly "earth-like" is defined. Would Venus and Mars qualify as earth like? Would a planet like Gliese 581 d with a mass of 5.6 to 7.7 times that of Earth qualify as earth like?

Link to this comment mp 09/28/11 at 5:49 pm

pheonix1012,
Ok, ok, there you go being all factual and informative and everything.

Second, I want our science community to find the mythical planet X that is earth sister planet of which earth was seeded with human DNA. You know the science fiction planet X. I adore the Stargate series, don't you? It's real right, planet X?

I do appreciate the extra information you just provided. ;)

Link to this comment aarontco 09/28/11 at 6:28 pm

These planets are far too far away to colonize any time soon. It would be far easier to build on the moon, mars, the moons of mars, or to situate orbital colonies in LaGrange regions and in the asteroid belt(s). Of course, before we do that, there are still plenty of places on Earth too. But off-world colonies have the advantage of spreading humanity's eggs into other baskets, so we can not be so easily wiped out by a single mega-catastrophe. Orbital colonies also have great access to energy and transportation, so long as we can solve major problems, such as adequate radiation shielding, and life support system self-sufficiency.

Link to this comment mp 09/28/11 at 7:16 pm

As we clearly identify these goldilocks, perhaps we could point our satellite dishes at each of them for a while and try to hear some good chatter...

Link to this comment Toran 09/28/11 at 11:19 pm

It's sad that we proceed with presumptions and limit our search to our definition of a habital zone. Even if we want to assume that liquid water is required for life, we cannot be sure of temperatures at these distant locals. Other elements and forces we have yet to experience may be on effect.

Link to this comment inaka_rob 09/28/11 at 11:32 pm

"Ok, ok, there you go being all factual and informative and everything. "
well its is called popular science, not popular science fiction.
but yes thank you phoenix for the info. That is why I thought eris was planet X. it was only "planet X" in the fact that for a brief period they thought it was the 10th planet, hence the X, but not THE mythical planet X. thank you for the explanation.

Link to this comment inaka_rob 09/28/11 at 11:36 pm

@Toran that is a good point. Time and time agian here on Earth the definition of life has surprised us and grown (just look at the taxonmy of "life" it has grown from a 3 kingdom system to a 5 or 6 kingdom system depending on if you study in the USA or the UK. plus it was only a couple decades ago they they realized archea evolved from a totally separate track than other prokaryotes). We have found life in the most improbably places thought for thousands of years to be 100% void of life.
but I suppose they figure these goldilocks zones have a higher probability of life. So far the only life we have found is on a Goldilocks planet. Earth.

Link to this comment pheonix1012 09/29/11 at 8:47 am

@mp

Of course I like science fiction. It logically stands to motivate imaginative youth into academic interest in science.

It's just that by definition Pluto is Planet X, and Planet X is just a traditional verification of the unknown. The term is more common place for candid or satirical statements regarding unspecified worlds. For that matter their are several thousand Planet Xs.

Link to this comment boka 09/29/11 at 11:08 am

It makes more sense to develop high speed space travel to other solar systems that have earth planets than trying to build on any of the planets in our system.

Link to this comment marcoreid 09/29/11 at 11:30 am

I love science and space travel as much as the next guy, and I sure do enjoy daydreaming about what we might be able to do one day.

However... I have to question whether or not this mission's life-cycle cost of US$600 million (including funding for 3.5 years of operation) really is really justified by what we're getting out of it. Great, we get to add a bunch of planets to our long list of known exoplanets. But what does that really do for us anytime in the next few hundred years?

We take that money away from people who work very hard, many of them to make sure they have the essentials of life from day to day. Then we dump it into a project that has no hope of ever doing anything remotely useful for these people. I would think there are some serious ethical issues with that, I know there are in my mind.

That $600 million could provide enough immunizations and basic supplies in 3rd world countries to save hundreds of thousands of children from early and painful deaths. Or it could be used in the US to build thousands of homes for homeless families. Or to provide educations to tens of thousands of kids who then have the potential of becoming scientists themselves, etc.

As fun and exciting as it is to "discover" these planets that we have absolutely no means of getting to for hundreds of years, I'd rather turn more kids into scientists now so that we can more quickly develop the technology to actually visit some of these exoplanets one day.

Link to this comment Nonapod 09/29/11 at 12:05 pm

I wish they'd get a little more specific by what the term "Sun-Like". Do they generally mean all G-Type main-sequence yellow dwarf stars, or a more broader solar analogue? It's significant since something like 90% of the stars out there are cooler red or orange dwarf stars and stars like our Sun are probably more like 5-7% of the total population of stars out there.

Link to this comment JediMindset 09/29/11 at 1:39 pm

@mp
planet x is very real.
youtube.com/watch?v=8S0bj76389U
youtube.com/watch?v=xpPP9Z9LOBU

_________________
The people of the world only divide into two kinds, One sort with brains who hold no religion, The other with religion and no brain.

- Abu-al-Ala al-Marri

Link to this comment dquad 09/29/11 at 2:07 pm

I guess it is time we start constructing neutrino space ships/yawn.

Link to this comment pheonix1012 09/29/11 at 3:18 pm

@Nonapod

The star types they mention in the article are F,G, and K. You gotta read the fine print. That's how they get ya.

@boka

We already know we can survive on a carbon copy of Earth. The real trick is trying to survive in "magnificent desolation."

Besides it's easier to get to these destinations now because they are closer. We still have to develop a relativistically quick means of journeying across stellar distances before we could ever consider mounting a mission outside of the solar system.

@marcoreid

Your sentiment is noble, but we are not going to solve all of the world's problem over night. Besides, there are already organizations that exists to try and solve these problems and they get sufficient government funding which is provided in part by yours truly (the taxpayer). Just be thankful to whatever deity you may pray to that you are fortunate enough to be surrounded by luxuries such as a computer wired to the internet.

As for astronomical research, if you don't have the strategic vision to understand why we do this let me paint you a picture:

Humanity's knowledge in physics has evolved over time and it has achieved a level of mastery over the forces of the spacetime continuum. The once impossible has been proven possible and made into a reality, much as is with many instances in the history of the advancement of human civilization on Earth.

Humanity has achieved the ability to traverse interstellar distances within the blink of an eye. Following the first two successful missions to 581 Gliese d and g, a new mission is underway to HD85512 to verify the planet's potential for harboring life...

Moral of the short story: Making these discoveries now lays the foundation for exploration in the future. To cease such scientific research for lack of long term vision would prove ultimately detrimental to the future, setting us back several hundreds to thousands of years after we develop the means of instellar travel. By the time we develop these methods (especially after several hundreds of years) continued planet hunting will provide us with a library of known star systems that could range from the millions to the billions.

This would be better than the Louis and Clarke approach because space is otherwise featureless. Wondering aimlessly can trap you in a void indefinitely and send you on a trajectory clear of the galaxy without every reaching a star system. In order explore space, you gotta know where your going and the search for destinations starts here on solid ground.

Link to this comment Cookiees453 09/29/11 at 6:45 pm

In May of 2010 6.7 Billion U.S. dollars was being spent in Afghanistan a month.....1 month. This is 600 million dollars over a couple of years.....600 million is pocket change.

Link to this comment Cookiees453 09/29/11 at 6:46 pm

If the government wants to cut cost, cut the war in the middle east. (Yeah, yeah, it's not as simple as that...but whatever)

Link to this comment mp 09/29/11 at 10:37 pm

pheonix1012,
I wish to give you the award of long ranting and commentaries. First I like to say most WOA! YO DUDE, you write a lot of words and stuff! Followed how you write so much and not piss off inaka_rob. He is like such a jealous bandit for the lime light and all? Yo, friend, I am just playing. Be happy! ;)

But back to topic, I was looking at the picture in the article and I wondered why the sun is attacking the planet with these cosmic plasma balls of light and stuff. Does the sun have a beef with the planet?

I hope soon earth points our satellites towards these potentially life giving planets to hear some kind of chatter of communication. Now wouldn't that be cool to hear a new version of Star Wars from a different planet and all!

Seriously, I appreciate the extra information you provide, thanks!

Link to this comment rlb2 09/30/11 at 2:46 am

"About one-third of FGK stars are predicted to have at least one terrestrial, habitable-zone planet."

A total of 22.7 percent of all the stars in our galaxy are class FGK stars, F = 3%, G=7.6%, K=12.1%, it was suggested that 33 percent may be within the habitable-zone.
There are approximately 300 billion, 300,000,000,000, stars in our Milky Way galaxy, 150 billion in the average size Galaxy. There's approximately 200 billion galaxy's in our know universe. That would mean that there are about 22.70 billion, 22,700,000,000 planets, in our Milky Way's habitable-zone or approximately 2.27X10²¹, 2,270,000,000,000,000,000,000 planets in our universe within a class FGK stars rated habitable zone.

Ron Bennett

Link to this comment Oakspar77777 09/30/11 at 9:06 am

Of course, a "habitable zone" is a nebulous term, as things like atmospheric gas can greatly affect the surface temperature of a planet. As well, internal temperature can create a "crust" effect (as is hypothesized about Europa).

Still, 22.7 billion planets in the Milky is not going to give you a good shot at a planet where you can take off your helmet and breathe (we are very fragile in what we breathe).

As for the 600m being spent on vaccines - to what end? Save them from Malaria to insure their starvation of resource competition, or 100m for vaccines on some with 500m for food support? Of course, what about the antibiotic when their population density gives them cholera?

You cannot and will not alieviate human suffering.

Link to this comment pheonix1012 09/30/11 at 11:23 am

@mp

I'm a wealth of knowledge seeking to educate those without. I wouldn't call much of what I do ranting (though a lot of it is). I just legitimize my general platforms with details and evidence. That often takes a lot of words, but might be shorter when spoken.

Link to this comment barclay109 09/30/11 at 12:13 pm

i saw on "The Universe" that there are more than 3 suns, this is interesting, good thing I'm going to college to be an astrophysicist

Link to this comment mp 09/30/11 at 3:40 pm

I really do hope some science community finds intelligent life we earthlings can communicate in my life time!!!

.................................
pheonix1012,
If my wording sounded less complimentary, I like to rephrase myself and just say, I enjoy the additional input you provide and say thanks. ;)

Link to this comment Pasha582 10/02/11 at 2:25 pm

Marcoreid writes: We take that money away from people who work very hard, many of them to make sure they have the essentials of life from day to day.

Not really. Although the poor pay payroll taxes which CAN amount to as high a percent as hedge fund managers pay on their entire salary... The point I want to make is that science is boring, without cool projects like Kepler to stimulate the minds of budding scientists, who would want to get involved in it? What would be the point? We need research like Kepler to whet the appetites and fire the imaginations of children into pursuing careers in science. Without that, who would want to do it?

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October 2011: The Search for Alien Life

This month, we examine all the ways we're looking for extraterrestrial life, within our solar system and beyond.

Plus: Our annual Brilliant 10 list of young researchers, the story behind that "arsenic-based life form found" story, birth control for wildlife, and much more.

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Wednesday, 19 October 2011

New targets for the control of HIV predicted using a novel computational analysis

ScienceDaily (Sep. 23, 2011) — A new computational approach has predicted numerous human proteins that the human immunodeficiency virus (HIV) requires to replicate itself. These discoveries "constitute a powerful resource for experimentalists who desire to discover new targets for human proteins that can control the spread of HIV," according to the authors of this study that appears in the Sept. 22, 2011 issue of PLoS Computational Biology, a journal published by the Public Library of Science.

The authors of the article are: T. M. Murali, a computer scientist, and Brett Tyler of the Virginia Bioinformatics Institute, both located at Virginia Tech, and Michael G. Katze, a microbiologist and associate director of the Washington National Primate Research Center at the University of Washington.

David Badger of Blacksburg, Va., one of Murali's graduate students, and Matthew D. Dyer of Applied Biosystems of Foster City, Cal., also contributed to the study, which was funded by grants from the National Institutes of Health to Katze, the Virginia Bioinformatics Institute Fellows Program to Murali and Tyler, and the Virginia Tech's Support Program for Innovative Research Strategies to Murali.

When a person contracts HIV, it causes the progressive failure of the body's immune system, with the onset of life threatening infections and diseases such as cancer. Over 25 years of intensive research have failed to create a vaccine for preventing HIV. Moreover, drugs used to cure HIV become rapidly ineffective because HIV is able to develop mutations against drugs, Murali said.

A recent line of research is examining whether human proteins can be targeted to cure HIV. Since viruses such as HIV have very small genomes, they must exploit the cellular machinery of the host to spread. Therefore, disrupting the activity of selected host proteins may impede viruses. Moreover, since human proteins evolve at a much slower rate than HIV proteins, human proteins that are targeted by drugs are very unlikely to develop mutations that render the drugs ineffective.

In fact, three studies published in 2008 systematically silenced virtually every human gene in order to discover HIV Dependency Factors (HDFs), i.e., those genes that are necessary for HIV to survive and replicate. Each of these three studies discovered hundreds of HDFs. However, a puzzling aspect was that only a handful of HDFs were common to two or more experiments.

"We set out to untangle this mystery," Murali said. "We hypothesized that many HDFs have not yet been discovered. Other papers had suggested that HDFs may themselves interact with each other. Inspired by these observations, we hypothesized that we could predict new HDFs by exploiting the proximity between HDFs within networks of interactions between human proteins."

To this end, they used an algorithm called SinkSource developed by Murali and Tyler. Tyler explained the algorithm using this analogy: "We treated the human protein network as if it were a system of tanks connected by pipes carrying water. This arrangement allowed us to study the flow of predictive information (water) from proteins we are certain about (full tanks) to those we are uncertain about (empty tanks). The further you get from the full tanks, the weaker the trickle, and the less water accumulates in the bottom of the tank. Mathematically you can show that, over time, every empty tank accumulates some stable level of water. At the end of the analysis, tanks accumulating lots of water were judged to be good predictions."

"We found that SinkSource and one of its variants made predictions of very high quality," Murali added. "We evaluated predicted HDFS using a number of additional datasets that we did not use during the prediction step."

Their most exciting results used an analysis of HDF activities in two non-human primate species that respond differently to Simian Immunodeficiency Virus (SIV). One species, the African green monkey, does not develop disease when infected by SIV, in contrast to the other species, pig-tailed macaque. Using data already published by Katze, the authors showed that predicted HDFs had very different patterns of expression in the two species, especially in lymph nodes and within 10 days after infection with the virus. They also showed that predicted HDFs participated in human cellular processes that are known to be subverted by the virus, including gene transcription and translation, energy production, protein degradation, and transport across the nuclear membrane. Moreover, many predicted HDFs themselves directly interacted with proteins in HIV.

From these results, Murali, Tyler, and Katze concluded that existing genomic screens are "incomplete and many HDFs are yet to be discovered experimentally. Our results suggest that many HDFs are yet to be discovered and that they have potential value as prognostic markers to determine pathological outcome and the likelihood of Acquired Immune Deficiency Syndrome (AIDS) development."

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The above story is reprinted (with editorial adaptations by ScienceDaily staff) from materials provided by Virginia Tech, via EurekAlert!, a service of AAAS.

Journal Reference:

T. M. Murali, Matthew D. Dyer, David Badger, Brett M. Tyler, Michael G. Katze. Network-Based Prediction and Analysis of HIV Dependency Factors. PLoS Computational Biology, 2011; 7 (9): e1002164 DOI: 10.1371/journal.pcbi.1002164

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Saturday, 15 October 2011

New targets for the control of HIV predicted using a novel computational analysis

ScienceDaily (Sep. 23, 2011) — A new computational approach has predicted numerous human proteins that the human immunodeficiency virus (HIV) requires to replicate itself. These discoveries "constitute a powerful resource for experimentalists who desire to discover new targets for human proteins that can control the spread of HIV," according to the authors of this study that appears in the Sept. 22, 2011 issue of PLoS Computational Biology, a journal published by the Public Library of Science.

The authors of the article are: T. M. Murali, a computer scientist, and Brett Tyler of the Virginia Bioinformatics Institute, both located at Virginia Tech, and Michael G. Katze, a microbiologist and associate director of the Washington National Primate Research Center at the University of Washington.

David Badger of Blacksburg, Va., one of Murali's graduate students, and Matthew D. Dyer of Applied Biosystems of Foster City, Cal., also contributed to the study, which was funded by grants from the National Institutes of Health to Katze, the Virginia Bioinformatics Institute Fellows Program to Murali and Tyler, and the Virginia Tech's Support Program for Innovative Research Strategies to Murali.

When a person contracts HIV, it causes the progressive failure of the body's immune system, with the onset of life threatening infections and diseases such as cancer. Over 25 years of intensive research have failed to create a vaccine for preventing HIV. Moreover, drugs used to cure HIV become rapidly ineffective because HIV is able to develop mutations against drugs, Murali said.

A recent line of research is examining whether human proteins can be targeted to cure HIV. Since viruses such as HIV have very small genomes, they must exploit the cellular machinery of the host to spread. Therefore, disrupting the activity of selected host proteins may impede viruses. Moreover, since human proteins evolve at a much slower rate than HIV proteins, human proteins that are targeted by drugs are very unlikely to develop mutations that render the drugs ineffective.

In fact, three studies published in 2008 systematically silenced virtually every human gene in order to discover HIV Dependency Factors (HDFs), i.e., those genes that are necessary for HIV to survive and replicate. Each of these three studies discovered hundreds of HDFs. However, a puzzling aspect was that only a handful of HDFs were common to two or more experiments.

"We set out to untangle this mystery," Murali said. "We hypothesized that many HDFs have not yet been discovered. Other papers had suggested that HDFs may themselves interact with each other. Inspired by these observations, we hypothesized that we could predict new HDFs by exploiting the proximity between HDFs within networks of interactions between human proteins."

To this end, they used an algorithm called SinkSource developed by Murali and Tyler. Tyler explained the algorithm using this analogy: "We treated the human protein network as if it were a system of tanks connected by pipes carrying water. This arrangement allowed us to study the flow of predictive information (water) from proteins we are certain about (full tanks) to those we are uncertain about (empty tanks). The further you get from the full tanks, the weaker the trickle, and the less water accumulates in the bottom of the tank. Mathematically you can show that, over time, every empty tank accumulates some stable level of water. At the end of the analysis, tanks accumulating lots of water were judged to be good predictions."

"We found that SinkSource and one of its variants made predictions of very high quality," Murali added. "We evaluated predicted HDFS using a number of additional datasets that we did not use during the prediction step."

Their most exciting results used an analysis of HDF activities in two non-human primate species that respond differently to Simian Immunodeficiency Virus (SIV). One species, the African green monkey, does not develop disease when infected by SIV, in contrast to the other species, pig-tailed macaque. Using data already published by Katze, the authors showed that predicted HDFs had very different patterns of expression in the two species, especially in lymph nodes and within 10 days after infection with the virus. They also showed that predicted HDFs participated in human cellular processes that are known to be subverted by the virus, including gene transcription and translation, energy production, protein degradation, and transport across the nuclear membrane. Moreover, many predicted HDFs themselves directly interacted with proteins in HIV.

From these results, Murali, Tyler, and Katze concluded that existing genomic screens are "incomplete and many HDFs are yet to be discovered experimentally. Our results suggest that many HDFs are yet to be discovered and that they have potential value as prognostic markers to determine pathological outcome and the likelihood of Acquired Immune Deficiency Syndrome (AIDS) development."

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Story Source:

The above story is reprinted (with editorial adaptations by ScienceDaily staff) from materials provided by Virginia Tech, via EurekAlert!, a service of AAAS.

Journal Reference:

T. M. Murali, Matthew D. Dyer, David Badger, Brett M. Tyler, Michael G. Katze. Network-Based Prediction and Analysis of HIV Dependency Factors. PLoS Computational Biology, 2011; 7 (9): e1002164 DOI: 10.1371/journal.pcbi.1002164

Note: If no author is given, the source is cited instead.

Disclaimer: This article is not intended to provide medical advice, diagnosis or treatment. Views expressed here do not necessarily reflect those of ScienceDaily or its staff.


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Thursday, 21 July 2011

Sun and planets constructed differently, analysis from NASA mission suggests

ScienceDaily (June 30, 2011) — The sun and the solar system's rocky inner planets, including Earth, may have formed differently than previously thought, according to UCLA scientists and colleagues analyzing samples returned by NASA's Genesis mission.

The data from Genesis, which collected material from the solar wind blowing from the sun, reveal differences between the sun and planets with regard to oxygen and nitrogen, two of the most abundant elements in our solar system, the researchers report in two studies in the June 24 issue of the journal Science. And although the differences are slight, the research could help determine how our solar system evolved.

"We want to understand how rocky planets form, particularly our rocky planet," said Genesis co-investigator and UCLA professor of Earth and space sciences Kevin McKeegan, who was the lead author of the Science study on oxygen. "To understand that, we need to understand how the isotope composition of the most abundant element in the Earth came to be what it is."

On Earth, the air contains three kinds, or isotopes, of oxygen atoms, which differ in the number of neutrons they contain. All three have eight protons, and almost all have eight neutrons (O-16), but a small proportion of isotopes contain nine neutrons (O-17) or 10 neutrons (O-18). Although isotopes of an element behave similarly, there are subtle differences in reaction rates according to the isotopic mass, McKeegan said.

"We found that the Earth and moon, as well as Martian and other meteorites, which are samples of asteroids, have a lower concentration of the O-16 than does the sun," McKeegan said. "The implication is that we did not form out of the same solar nebula materials that created the sun. Just how and why remains to be discovered."

McKeegan and his colleagues measured, for the first time, the isotopic composition of oxygen in the solar wind. They found that the sun has about 6 percent more O-16 -- relative to both of the minor oxygen isotopes -- than Earth does. Because the sun represents the "starting composition of the entire solar system," these findings are surprising, McKeegan said.

"It's the most abundant element in the Earth, and it is isotopically anomalous," he said, adding that something chemically unusual happened to the material that eventually formed Earth and other rocky planets some 4.6 billion years ago, after the sun had already formed.

"The present composition of the rocky planets is quite different from the starting composition in a way we do not fully understand," he said, "but it must have involved interesting chemistry before the planets formed in the gaseous nebula that produced the sun and planets."

The data were obtained from an analysis of material ejected from the outer portion of the sun. That material can be thought of as a "fossil of our nebula" because scientific evidence suggests that the sun's outer layer has not changed measurably in billions of years. The sample of solar material collected by Genesis was small, but there was enough to be analyzed using UCLA's MegaSIMS (secondary ion mass spectrometer).

"This is the first time the heavy elements in the sun have had their isotope composition determined with precision, directly from solar material," McKeegan said. "The Genesis mission was a success. The mission has achieved its highest priority objectives. We are learning how planets form."

Analyses of meteorites from Mars indicate that oxygen on Mars is very similar to oxygen on Earth, but not identical, McKeegan said.

Genesis launched in August 2001. The spacecraft traveled to the L1 Lagrange Point, about 1 million miles from Earth, where it remained for 886 days between 2001 and 2004, passively collecting solar wind samples.

On Sept. 8, 2004, the spacecraft released a sample return capsule that entered Earth's atmosphere. Although the capsule made a hard landing -- the result of a failed parachute -- in the Utah Test and Training Range in Dugway, Utah, it marked NASA's first sample return since the final Apollo lunar mission in 1972 and the first material collected beyond the moon.

Co-authors of the oxygen study included Veronika Heber, a UCLA research scientist in the Department of Earth and Space Sciences; George Jarzebinski, senior electronics engineer at UCLA; Chris Coath, a former UCLA researcher who designed the ion optics of the MegaSIMS; Peter Mao, a former UCLA researcher who is currently an astrophysicist at the California Institute of Technology; Antti Kallio, a former UCLA postdoctoral scholar who acquired much of the solar wind data; Takaya Kunihiro, a former UCLA postdoctoral scholar currently at Japan's Okayama University; and Don Burnett, a professor at the California Institute of Technology, who was Genesis' principal investigator. A team from Los Alamos National Laboratory led by Roger Wiens built a device on the Genesis spacecraft for the analysis of oxygen and nitrogen from the solar wind. Wiens and his colleagues are also co-authors of the study. NASA funded the research.

"The sun houses more than 99 percent of the material currently in our solar system, so it's a good idea to get to know it better," Burnett said.

A second paper in Science by different researchers details differences between the sun and planets with regard to the element nitrogen. Like oxygen, nitrogen has one isotope (N-14) that makes up nearly 100 percent of the nitrogen atoms in the solar system, but there is also a tiny amount of N-15.

Researchers studying the same Genesis samples found that compared to Earth's atmosphere, nitrogen in the sun and Jupiter had slightly more N-14 -- but 40 percent less N-15. The sun and Jupiter appear to have the same nitrogen composition, but as with oxygen, the nitrogen composition of Earth and the rest of the inner solar system is very different.

"These findings show that all solar system objects, including the terrestrial planets, meteorites and comets, are anomalous compared to the initial composition of the nebula from which the solar system formed," said Bernard Marty, a Genesis co-investigator from the Centre de Recherches Pétrographiques et Géochimiques in France and lead author of the second Science study. "Understanding the cause of such a heterogeneity will impact our view on the formation of the solar system."

The Jet Propulsion Laboratory in Pasadena, Calif., managed the Genesis mission for NASA's Science Mission Directorate in Washington, D.C. Genesis was part of the Discovery Program managed at NASA's Marshall Space Flight Center in Huntsville, Ala. Lockheed Martin Space Systems in Denver developed and operated the spacecraft. Analysis at the Centre de Recherches Pétrographiques et Géochimiques was supported by the Centre National d'Etudes Spatiales and the Centre National de la Recherche Scientifique, both in Paris.

For more information on the Genesis mission, visit http://genesismission.jpl.nasa.gov.

Story Source:

The above story is reprinted (with editorial adaptations by ScienceDaily staff) from materials provided by University of California - Los Angeles. The original article was written by Stuart Wolpert.

Journal References:

K. D. McKeegan, A. P. A. Kallio, V. S. Heber, G. Jarzebinski, P. H. Mao, C. D. Coath, T. Kunihiro, R. C. Wiens, J. E. Nordholt, R. W. Moses, D. B. Reisenfeld, A. J. G. Jurewicz, D. S. Burnett. The Oxygen Isotopic Composition of the Sun Inferred from Captured Solar Wind. Science, 2011; 332 (6037): 1528 DOI: 10.1126/science.1204636B. Marty, M. Chaussidon, R. C. Wiens, A. J. G. Jurewicz, D. S. Burnett. A 15N-Poor Isotopic Composition for the Solar System As Shown by Genesis Solar Wind Samples. Science, 2011; 332 (6037): 1533 DOI: 10.1126/science.1204656

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Disclaimer: Views expressed in this article do not necessarily reflect those of ScienceDaily or its staff.


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Friday, 3 June 2011

Economic analysis updated for the National Petroleum Reserve in Alaska

ScienceDaily (May 4, 2011) — The U.S. Geological Survey assessment on the economic recoverability of undiscovered, conventional oil and gas resources within the National Petroleum Reserve in Alaska (NPRA) and adjacent state waters is now available.

This economic analysis is based on a 2010 USGS resource assessment that determined how much undiscovered, conventional oil and gas in the NPRA is technically recoverable. These reports provide updates from the USGS 2003 economic analysis and 2002 resource assessment of the NPRA.

"The USGS conducts assessment updates to re-evaluate petroleum potential as new data and information become available," said USGS Energy Resources Program Coordinator Brenda Pierce. "Understanding how much undiscovered, technically recoverable resource might be present serves as a basis for calculating how much might be economically developed."

Technically recoverable resources are those that could be potentially produced using current technology and industry practices. Economically recoverable resources are those that can be sold at a price that covers the costs of discovery, development, production and transportation to the market.

The new economic analysis estimates that approximately 273 million barrels of undiscovered oil are economically recoverable at an oil price of $72 per barrel (comparable to $8 per thousand cubic feet of gas). About 500 million barrels of undiscovered oil are economically recoverable at $90 per barrel (comparable to $10 per thousand cubic feet of gas). These estimates do not include the discovered oil accumulations in northeastern NPRA that have not yet been developed.

The economically recoverable oil estimates above are dependent upon gas exploration in the NPRA, meaning that it is assumed the oil would be found in the process of looking primarily for gas.

The USGS assessment also found that about 18 trillion cubic feet of undiscovered gas are economically recoverable when the market price is $8 or more per thousand cubic feet, and 32 trillion cubic feet of undiscovered gas would be economic when the market price is $10 or more per thousand cubic feet.

There currently is no pipeline in place to transport gas from the North Slope of Alaska, so this assessment assumes that there is a 10- or 20-year delay between discovery and production in the NPRA. This analysis shows that if a pipeline is constructed, there is a significant amount of gas that is economically recoverable from the NPRA when prices are above $8 per thousand cubic feet of gas.

The different market prices quoted above for the same resource are because some resource accumulations are relatively easy to find and produce while others are not and therefore cost more.

"USGS estimates are based on 2010 costs and technology, and these results could change over time as they are dependent on multiple factors," said USGS scientist Emil Attanasi, who was the lead author for this assessment. "For example, USGS economic recoverability estimates could vary in the future depending on the timeframe and costs to construct a gas pipeline to the NPRA, technological advances that make resource extraction and development easier and less expensive, and fluctuating market prices for oil and gas."

The amount of oil that could be economically developed is significantly less than what the 2003 analysis concluded. One reason for the reduction is reduced volumes of technically recoverable oil based on recent NPRA exploration drilling which found gas rather than oil.

All of the cited resource estimates are based on the mean undiscovered resources.

Story Source:

The above story is reprinted (with editorial adaptations by ScienceDaily staff) from materials provided by United States Geological Survey.

Note: If no author is given, the source is cited instead.

Disclaimer: Views expressed in this article do not necessarily reflect those of ScienceDaily or its staff.


View the original article here

Saturday, 21 May 2011

Economic analysis updated for the National Petroleum Reserve in Alaska

ScienceDaily (May 4, 2011) — The U.S. Geological Survey assessment on the economic recoverability of undiscovered, conventional oil and gas resources within the National Petroleum Reserve in Alaska (NPRA) and adjacent state waters is now available.

This economic analysis is based on a 2010 USGS resource assessment that determined how much undiscovered, conventional oil and gas in the NPRA is technically recoverable. These reports provide updates from the USGS 2003 economic analysis and 2002 resource assessment of the NPRA.

"The USGS conducts assessment updates to re-evaluate petroleum potential as new data and information become available," said USGS Energy Resources Program Coordinator Brenda Pierce. "Understanding how much undiscovered, technically recoverable resource might be present serves as a basis for calculating how much might be economically developed."

Technically recoverable resources are those that could be potentially produced using current technology and industry practices. Economically recoverable resources are those that can be sold at a price that covers the costs of discovery, development, production and transportation to the market.

The new economic analysis estimates that approximately 273 million barrels of undiscovered oil are economically recoverable at an oil price of $72 per barrel (comparable to $8 per thousand cubic feet of gas). About 500 million barrels of undiscovered oil are economically recoverable at $90 per barrel (comparable to $10 per thousand cubic feet of gas). These estimates do not include the discovered oil accumulations in northeastern NPRA that have not yet been developed.

The economically recoverable oil estimates above are dependent upon gas exploration in the NPRA, meaning that it is assumed the oil would be found in the process of looking primarily for gas.

The USGS assessment also found that about 18 trillion cubic feet of undiscovered gas are economically recoverable when the market price is $8 or more per thousand cubic feet, and 32 trillion cubic feet of undiscovered gas would be economic when the market price is $10 or more per thousand cubic feet.

There currently is no pipeline in place to transport gas from the North Slope of Alaska, so this assessment assumes that there is a 10- or 20-year delay between discovery and production in the NPRA. This analysis shows that if a pipeline is constructed, there is a significant amount of gas that is economically recoverable from the NPRA when prices are above $8 per thousand cubic feet of gas.

The different market prices quoted above for the same resource are because some resource accumulations are relatively easy to find and produce while others are not and therefore cost more.

"USGS estimates are based on 2010 costs and technology, and these results could change over time as they are dependent on multiple factors," said USGS scientist Emil Attanasi, who was the lead author for this assessment. "For example, USGS economic recoverability estimates could vary in the future depending on the timeframe and costs to construct a gas pipeline to the NPRA, technological advances that make resource extraction and development easier and less expensive, and fluctuating market prices for oil and gas."

The amount of oil that could be economically developed is significantly less than what the 2003 analysis concluded. One reason for the reduction is reduced volumes of technically recoverable oil based on recent NPRA exploration drilling which found gas rather than oil.

All of the cited resource estimates are based on the mean undiscovered resources.

Story Source:

The above story is reprinted (with editorial adaptations by ScienceDaily staff) from materials provided by United States Geological Survey.

Note: If no author is given, the source is cited instead.

Disclaimer: Views expressed in this article do not necessarily reflect those of ScienceDaily or its staff.


View the original article here